Index

A

add_systematic_variance() (in module neunorm.processing.uncertainty_calculator) aggregate_resonance_image() (in module neunorm.tof.resonance) analyze_statistics() (in module neunorm.tof.statistics_analyzer) angstrom_to_meter() (in module neunorm.utils.constants) apply_air_region_correction() (in module neunorm.processing.air_region_corrector) apply_background_roi() (in module neunorm.processing.normalizer)

apply_gamma_filter() (in module neunorm.filters.gamma_filter) apply_roi() (in module neunorm.processing.roi_clipper) as_bounds() (neunorm.data_models.roi.ROI method) as_roi_bounds() (in module neunorm.data_models.roi) as_roi_bounds_list() (in module neunorm.processing.normalizer) assign_chip_ids() (in module neunorm.tof.pulse_reconstruction) attach_poisson_variance() (in module neunorm.processing.uncertainty_calculator)

B

BinningConfig (class in neunorm.data_models.tof)

C

combine_runs() (in module neunorm.processing.run_combiner) convert_energy_to_tof() (in module neunorm.tof.coordinate_converter) convert_events_to_2d_histogram() (in module neunorm.tof.event_converter) convert_events_to_histogram() (in module neunorm.tof.event_converter) convert_metadata_to_scitiff_coords() (in module neunorm.exporters.tiff_writer)

convert_tof_to_energy() (in module neunorm.tof.coordinate_converter) convert_tof_to_wavelength() (in module neunorm.tof.coordinate_converter) convert_wavelength_to_tof() (in module neunorm.tof.coordinate_converter) counts_per_bin (neunorm.tof.statistics_analyzer.StatisticsReport attribute) create_tof_bins() (in module neunorm.tof.binning)

D

DE_BROGLIE_EV_ANGSQ (in module neunorm.utils.constants) detect_bad_pixels_for_transmission() (in module neunorm.tof.pixel_detector)

detect_dead_pixels() (in module neunorm.tof.pixel_detector) detect_hot_pixels() (in module neunorm.tof.pixel_detector) detect_resonances() (in module neunorm.tof.resonance)

E

E_CHARGE (in module neunorm.utils.constants) energy_to_wavelength() (in module neunorm.tof.binning)

ev_to_joule() (in module neunorm.utils.constants) EventData (class in neunorm.data_models.core)

G

get_energy_histogram() (in module neunorm.tof.binning) get_relative_uncertainty() (in module neunorm.processing.uncertainty_calculator)

get_uncertainty() (in module neunorm.processing.uncertainty_calculator) get_wavelength_histogram() (in module neunorm.tof.binning)

H

H (in module neunorm.utils.constants)

H_OVER_MN (in module neunorm.utils.constants)

J

joule_to_ev() (in module neunorm.utils.constants)

L

load_event_data() (in module neunorm.loaders.event_loader) load_event_nexus() (in module neunorm.loaders.event_loader) load_fits_stack() (in module neunorm.loaders.fits_loader) load_metadata() (in module neunorm.loaders.metadata_loader)

load_shutter_counts() (in module neunorm.loaders.metadata_loader) load_spectra_tof() (in module neunorm.loaders.metadata_loader) load_stack() (in module neunorm.loaders.stack_loader) load_tiff_stack() (in module neunorm.loaders.tiff_loader) low_statistics_bins (neunorm.tof.statistics_analyzer.StatisticsReport attribute)

M

M_N (in module neunorm.utils.constants) MARS_FLIGHT_PATH_M (in module neunorm.utils.constants) median_with_variance() (in module neunorm.processing.reference_preparer) meter_to_angstrom() (in module neunorm.utils.constants) model_config (neunorm.data_models.core.EventData attribute) (neunorm.data_models.roi.ROI attribute) (neunorm.data_models.tof.BinningConfig attribute) (neunorm.tof.resonance.ResonanceDetectionConfig attribute) module neunorm.data_models.core neunorm.data_models.roi neunorm.data_models.tof neunorm.exporters.hdf5_writer neunorm.exporters.tiff_writer neunorm.filters.gamma_filter neunorm.loaders.event_loader neunorm.loaders.fits_loader neunorm.loaders.metadata_loader neunorm.loaders.stack_loader neunorm.loaders.tiff_loader neunorm.pipelines.mars_ccd neunorm.pipelines.mars_tpx3 neunorm.pipelines.venus_ccd neunorm.pipelines.venus_tpx1 neunorm.pipelines.venus_tpx3_event neunorm.pipelines.venus_tpx3_histogram neunorm.processing.air_region_corrector neunorm.processing.dark_corrector neunorm.processing.normalizer neunorm.processing.reference_preparer neunorm.processing.roi_clipper neunorm.processing.run_combiner neunorm.processing.spatial_rebinner neunorm.processing.uncertainty_calculator neunorm.tof.binning neunorm.tof.coordinate_converter neunorm.tof.event_converter neunorm.tof.histogram_rebinner neunorm.tof.pixel_detector neunorm.tof.pulse_reconstruction neunorm.tof.resonance neunorm.tof.statistics_analyzer neunorm.utils.constants

N

neunorm.data_models.core module neunorm.data_models.roi module neunorm.data_models.tof module neunorm.exporters.hdf5_writer module neunorm.exporters.tiff_writer module neunorm.filters.gamma_filter module neunorm.loaders.event_loader module neunorm.loaders.fits_loader module neunorm.loaders.metadata_loader module neunorm.loaders.stack_loader module neunorm.loaders.tiff_loader module neunorm.pipelines.mars_ccd module neunorm.pipelines.mars_tpx3 module neunorm.pipelines.venus_ccd module neunorm.pipelines.venus_tpx1 module neunorm.pipelines.venus_tpx3_event module neunorm.pipelines.venus_tpx3_histogram module neunorm.processing.air_region_corrector module

neunorm.processing.dark_corrector module neunorm.processing.normalizer module neunorm.processing.reference_preparer module neunorm.processing.roi_clipper module neunorm.processing.run_combiner module neunorm.processing.spatial_rebinner module neunorm.processing.uncertainty_calculator module neunorm.tof.binning module neunorm.tof.coordinate_converter module neunorm.tof.event_converter module neunorm.tof.histogram_rebinner module neunorm.tof.pixel_detector module neunorm.tof.pulse_reconstruction module neunorm.tof.resonance module neunorm.tof.statistics_analyzer module neunorm.utils.constants module normalize_transmission() (in module neunorm.processing.normalizer) normalize_with_dark() (in module neunorm.processing.normalizer)

P

prepare_reference() (in module neunorm.processing.reference_preparer)

preserve_regions (neunorm.tof.statistics_analyzer.StatisticsReport attribute) print_detection_summary() (in module neunorm.tof.resonance)

R

rebin_spatial() (in module neunorm.processing.spatial_rebinner) rebin_tof() (in module neunorm.tof.histogram_rebinner) rebin_with_snapped_boundaries() (in module neunorm.tof.histogram_rebinner) recommended_rebinning (neunorm.tof.statistics_analyzer.StatisticsReport attribute) reconstruct_pulse_ids() (in module neunorm.tof.pulse_reconstruction) ResonanceDetectionConfig (class in neunorm.tof.resonance)

ROI (class in neunorm.data_models.roi) run_mars_ccd_pipeline() (in module neunorm.pipelines.mars_ccd) run_mars_tpx3_pipeline() (in module neunorm.pipelines.mars_tpx3) run_venus_ccd_pipeline() (in module neunorm.pipelines.venus_ccd) run_venus_tpx1_pipeline() (in module neunorm.pipelines.venus_tpx1) run_venus_tpx3_event_pipeline() (in module neunorm.pipelines.venus_tpx3_event) run_venus_tpx3_histogram_pipeline() (in module neunorm.pipelines.venus_tpx3_histogram)

S

snr_per_bin (neunorm.tof.statistics_analyzer.StatisticsReport attribute)

StatisticsReport (class in neunorm.tof.statistics_analyzer) subtract_dark() (in module neunorm.processing.dark_corrector)

T

tof_to_energy() (in module neunorm.tof.binning) tof_to_wavelength() (in module neunorm.tof.binning)

TPX3_CLOCK_NS (in module neunorm.utils.constants) TPX4_CLOCK_NS (in module neunorm.utils.constants)

V

validate_array_1d() (neunorm.data_models.core.EventData class method) validate_chip_id_dtype() (neunorm.data_models.core.EventData class method) validate_coordinate_dtype() (neunorm.data_models.core.EventData class method) validate_energy_range_values() (neunorm.data_models.tof.BinningConfig class method) validate_file_exists() (neunorm.data_models.core.EventData class method) validate_lengths() (neunorm.data_models.core.EventData method) validate_max_greater_than_min() (neunorm.tof.resonance.ResonanceDetectionConfig class method)

validate_optional_array_1d() (neunorm.data_models.core.EventData class method) validate_pulse_id_dtype() (neunorm.data_models.core.EventData class method) validate_range_required() (neunorm.data_models.tof.BinningConfig method) validate_tof_dtype() (neunorm.data_models.core.EventData class method) validate_tof_range_values() (neunorm.data_models.tof.BinningConfig class method) validate_wavelength_range_values() (neunorm.data_models.tof.BinningConfig class method) VENUS_FLIGHT_PATH_M (in module neunorm.utils.constants)

W

wavelength_to_energy() (in module neunorm.tof.binning)

write_hdf5() (in module neunorm.exporters.hdf5_writer) write_tiff_stack() (in module neunorm.exporters.tiff_writer)